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Same-sex couples can't file joint federal taxes

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Moulton said the federal tax issues goes beyond filing status and estate taxes, which is the basis of the DOMA case before the Supreme Court. Also at issue is the tax treatment of company-provided health benefits. "If the person is not a spouse or dependent under federal law, that is treated as taxable income," he said.

"It's a very complex and cumbersome practice for gay married couples to prepare tax returns," said Kathy Pickering, executive director of The Tax Institute at H&R Block.

Since spouses in gay marriages have to file federal taxes separately, each can decide whether to itemize deductions or take the standard deduction, depending on which is more advantageous. The standard deduction for 2012 is $5,950 for individuals.

Then, there's the issue of dependents.

Married same-sex parents will have to decide who will claim the children as dependents for tax purposes. One can, but not both. If both do, they're essentially leaving it up to the IRS to decide who gets to claim the children. The IRS says it will first look at who the kids lived with longest during the year. If the period is the same, the person with the higher adjusted gross income usually will get to claim the children.

How will the IRS know if both members of the couple try claiming the child? You have to report the Social Security number of qualifying dependents of your tax return.

If a child was adopted, each parent in a same-sex union can claim the adoption credit for the individual expenses incurred, but the total cannot exceed $12,650, the maximum credit.

What if a person is adopting the child of the same-sex partner?

"The law does not allow taxpayers to claim an adoption credit for expenses incurred in adopting the child of the taxpayer's spouse," the IRS says. "However, this limitation does not apply to adoptions by same-sex partners because same-sex partners, even if married for state law purposes, are not treated as spouses under federal law."

Because same-sex couples aren't legally married in the eyes of the federal government, they don't get the favorable treatment for estate taxes that a heterosexual couple would.

Copyright 2013 The Associated Press. All rights reserved. This material may not be published, broadcast, rewritten or redistributed.

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